GeneID v1.3 is gene prediction software that allows the incorporation of U12-dependent introns (often with non-canonical splice sites) in the predicted gene models. A preliminary set of predictions on the ENCODE regions of the human genome is available for browsing on the UCSC genome browser in the EGASP-full track.

Wormtimer is software Tyler wrote to track the movement of nemotode worms. Available for download for any JAVA-enabled platform.